STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW20362.1Hypothetical protein; KEGG: mgm:Mmc1_2604 MT-A70 family protein. (285 aa)    
Predicted Functional Partners:
EGW19796.1
KEGG: dat:HRM2_20620 ATP-dependent DNA excision repair protein (helicase superfamily).
  
    0.927
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.838
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
 
  0.827
EGW20361.1
KEGG: slt:Slit_0072 hypothetical protein.
       0.551
EGW20363.1
PFAM: GCN5-related N-acetyltransferase; KEGG: meh:M301_0261 GCN5-related N-acetyltransferase.
       0.508
EGW20364.1
PFAM: Aldo/keto reductase; KEGG: mca:MCA0485 aldo/keto reductase family oxidoreductase.
       0.508
EGW20622.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
    
 
 0.430
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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