STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW20788.1PFAM: Secretion protein HlyD; KEGG: nde:NIDE0031 putative secretion protein HlyD. (369 aa)    
Predicted Functional Partners:
EGW20791.1
PFAM: ABC-2 type transporter; KEGG: tcx:Tcr_1136 hypothetical protein.
  
 0.970
EGW20787.1
PFAM: Outer membrane efflux protein; KEGG: pol:Bpro_5561 outer membrane efflux protein.
 
 0.961
EGW20789.1
Monosaccharide-transporting ATPase; PFAM: ABC transporter-like; KEGG: nde:NIDE0032 ABC transporter ATPase; SMART: ATPase, AAA+ type, core.
  
 0.954
EGW20790.1
PFAM: ABC-2 type transporter; KEGG: dal:Dalk_5053 ABC-2 type transporter.
  
 0.954
EGW22080.1
Peptide-transporting ATPase; PFAM: ABC transporter-like; ABC transporter, transmembrane region; KEGG: slt:Slit_1605 ABC transporter related protein; SMART: ATPase, AAA+ type, core.
  
 0.864
macB
Phosphonate-transporting ATPase; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.783
EGW20786.1
PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: mca:MCA2256 TetR family transcriptional regulator.
       0.707
EGW21164.1
PFAM: Outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE, putative.
 
 0.697
EGW20572.1
KEGG: NodT family RND efflux system, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein.
 
 0.693
EGW22637.1
KEGG: mmb:Mmol_0046 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein.
  
 0.667
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.