Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
PFAM- Protein of unknown function DUF891; KEGG- cja-CJA_1213 hypothetical protein (115 aa)
Predicted Functional Partners:
KEGG- nwa-Nwat_2421 hypothetical protein (94 aa)
Transcriptional regulator, XRE family; KEGG- eba-ebB120 hypothetical protein; PFAM- Helix-turn-helix type 3; SMART- Helix-turn-helix type 3 (94 aa)
PFAM- Glycosyl transferase, family 3, N-terminal; KEGG- hch-HCH_02544 hypothetical protein (342 aa)
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily (295 aa)
KEGG- app-CAP2UW1_3238 PilT protein domain protein; TIGRFAM- Protein of unknown function DUF132; SMART- Nucleotide binding protein, PINc (139 aa)
PFAM- Protein of unknown function DUF497; KEGG- glo-Glov_2221 protein of unknown function DUF497 (97 aa)
KEGG- gpb-HDN1F_17230 hypothetical protein (74 aa)
Putative transcription regulator with HTH domain; Manually curated; KEGG- slt-Slit_2794 transcriptional regulator, XRE family (135 aa)
KEGG- gur-Gura_2272 hypothetical protein; manually curated; PFAM- Protein of unknown function DUF497 (94 aa)
Transcriptional modulator of MazE/toxin, MazF; PFAM- PemK-like protein; KEGG- xac-XACa0027 plasmid stable inheritance protein K (110 aa)
Your Current Organism:
NCBI taxonomy Id: 697282 Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96