STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGW20939.1KEGG: nwa:Nwat_2421 hypothetical protein. (94 aa)    
Predicted Functional Partners:
EGW20938.1
PFAM: Protein of unknown function DUF891; KEGG: cja:CJA_1213 hypothetical protein.
 
  
 0.961
EGW21814.1
PFAM: Protein of unknown function DUF891; KEGG: eba:ebA3772 hypothetical protein.
 
  
 0.798
EGW21815.1
Transcriptional regulator, XRE family; KEGG: eba:ebB120 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3.
  
    0.766
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.515
EGW20937.1
PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: hch:HCH_02544 hypothetical protein.
       0.515
Your Current Organism:
Methylobacter tundripaludum
NCBI taxonomy Id: 697282
Other names: M. tundripaludum SV96, Methylobacter sp. SV96, Methylobacter tundripaludum DSM 17260, Methylobacter tundripaludum SV96, Methylobacter tundripaludum str. SV96, Methylobacter tundripaludum strain SV96
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.