Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Atu | C0J52_20275 | A0A2P8XPP4 | A0A2P8XL19 | Another transcription unit protein. | Uncharacterized protein. | 0.993 |
Atu | Iws1 | A0A2P8XPP4 | A0A2P8XEL1 | Another transcription unit protein. | Protein IWS1. | 0.971 |
Atu | PAF1 | A0A2P8XPP4 | A0A2P8XD75 | Another transcription unit protein. | RNA polymerase II-associated factor 1. | 0.999 |
Atu | Polr2c | A0A2P8XPP4 | A0A2P8YBY2 | Another transcription unit protein. | DNA-directed RNA polymerase II subunit RPB3. | 0.970 |
Atu | RpII140 | A0A2P8XPP4 | A0A2P8Y4Z7 | Another transcription unit protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
Atu | Spt6 | A0A2P8XPP4 | A0A2P8Y1Y6 | Another transcription unit protein. | Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. | 0.968 |
Atu | Ssrp | A0A2P8XPP4 | A0A2P8XHV6 | Another transcription unit protein. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.974 |
Atu | ctr9 | A0A2P8XPP4 | A0A2P8YB80 | Another transcription unit protein. | RNA polymerase-associated protein CTR9. | 0.995 |
Atu | dre4 | A0A2P8XPP4 | A0A2P8XL06 | Another transcription unit protein. | FACT complex subunit spt16. | 0.993 |
Atu | supt4h1 | A0A2P8XPP4 | A0A2P8Z4Q1 | Another transcription unit protein. | Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. | 0.984 |
C0J52_20275 | Atu | A0A2P8XL19 | A0A2P8XPP4 | Uncharacterized protein. | Another transcription unit protein. | 0.993 |
C0J52_20275 | Iws1 | A0A2P8XL19 | A0A2P8XEL1 | Uncharacterized protein. | Protein IWS1. | 0.969 |
C0J52_20275 | PAF1 | A0A2P8XL19 | A0A2P8XD75 | Uncharacterized protein. | RNA polymerase II-associated factor 1. | 0.988 |
C0J52_20275 | Polr2c | A0A2P8XL19 | A0A2P8YBY2 | Uncharacterized protein. | DNA-directed RNA polymerase II subunit RPB3. | 0.989 |
C0J52_20275 | RpII140 | A0A2P8XL19 | A0A2P8Y4Z7 | Uncharacterized protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.985 |
C0J52_20275 | Spt6 | A0A2P8XL19 | A0A2P8Y1Y6 | Uncharacterized protein. | Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. | 0.988 |
C0J52_20275 | Ssrp | A0A2P8XL19 | A0A2P8XHV6 | Uncharacterized protein. | FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] | 0.962 |
C0J52_20275 | ctr9 | A0A2P8XL19 | A0A2P8YB80 | Uncharacterized protein. | RNA polymerase-associated protein CTR9. | 0.990 |
C0J52_20275 | dre4 | A0A2P8XL19 | A0A2P8XL06 | Uncharacterized protein. | FACT complex subunit spt16. | 0.959 |
C0J52_20275 | supt4h1 | A0A2P8XL19 | A0A2P8Z4Q1 | Uncharacterized protein. | Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. | 0.989 |
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