C0J52_28381 protein (Blattella germanica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C0J52_28381

Uncharacterized protein. (256 aa)

Predicted Functional Partners:

C0J52_19556

0.597

C0J52_06071

0.561

GGCT

0.535

brcc3

0.532

C0J52_05687

0.532

C0J52_07190

0.526

RPL21

0.502

C0J52_21737

0.483

RpL13A

0.462

C0J52_16891

0.451

Your Current Organism:

Blattella germanica

NCBI taxonomy Id: 6973
Other names: B. germanica, German cockroach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0J52_05687	C0J52_06071	A0A2P8ZG05	A0A2P8Z3V2	MPN domain-containing protein.	Uncharacterized protein.	0.978
C0J52_05687	C0J52_19556	A0A2P8ZG05	A0A2P8Y9B9	MPN domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.896
C0J52_05687	C0J52_21737	A0A2P8ZG05	A0A2P8XL32	MPN domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.577
C0J52_05687	C0J52_28381	A0A2P8ZG05	A0A2P8XIU2	MPN domain-containing protein.	Uncharacterized protein.	0.532
C0J52_05687	GGCT	A0A2P8ZG05	A0A2P8YQ23	MPN domain-containing protein.	Gamma-glutamylcyclotransferase.	0.977
C0J52_06071	C0J52_05687	A0A2P8Z3V2	A0A2P8ZG05	Uncharacterized protein.	MPN domain-containing protein.	0.978
C0J52_06071	C0J52_19556	A0A2P8Z3V2	A0A2P8Y9B9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.977
C0J52_06071	C0J52_21737	A0A2P8Z3V2	A0A2P8XL32	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.720
C0J52_06071	C0J52_28381	A0A2P8Z3V2	A0A2P8XIU2	Uncharacterized protein.	Uncharacterized protein.	0.561
C0J52_06071	GGCT	A0A2P8Z3V2	A0A2P8YQ23	Uncharacterized protein.	Gamma-glutamylcyclotransferase.	0.638
C0J52_06071	brcc3	A0A2P8Z3V2	A0A2P8YAA1	Uncharacterized protein.	Lys-63-specific deubiquitinase BRCC36.	0.999
C0J52_07190	C0J52_16891	A0A2P8Y954	A0A2P8XT87	Uncharacterized protein.	Ribosomal_L2 domain-containing protein.	0.489
C0J52_07190	C0J52_28381	A0A2P8Y954	A0A2P8XIU2	Uncharacterized protein.	Uncharacterized protein.	0.526
C0J52_16891	C0J52_07190	A0A2P8XT87	A0A2P8Y954	Ribosomal_L2 domain-containing protein.	Uncharacterized protein.	0.489
C0J52_16891	C0J52_28381	A0A2P8XT87	A0A2P8XIU2	Ribosomal_L2 domain-containing protein.	Uncharacterized protein.	0.451
C0J52_16891	GGCT	A0A2P8XT87	A0A2P8YQ23	Ribosomal_L2 domain-containing protein.	Gamma-glutamylcyclotransferase.	0.935
C0J52_16891	RPL21	A0A2P8XT87	A0A2P8Y067	Ribosomal_L2 domain-containing protein.	60S ribosomal protein L21.	0.999
C0J52_16891	RpL13A	A0A2P8XT87	A0A2P8Z8S9	Ribosomal_L2 domain-containing protein.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.994
C0J52_19556	C0J52_05687	A0A2P8Y9B9	A0A2P8ZG05	ANK_REP_REGION domain-containing protein.	MPN domain-containing protein.	0.896
C0J52_19556	C0J52_06071	A0A2P8Y9B9	A0A2P8Z3V2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.977