STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sol_0Calpain-D; Belongs to the peptidase C2 family. (810 aa)    
Predicted Functional Partners:
C0J52_04936
Uncharacterized protein.
    
   0.854
C0J52_04937
SoHo domain-containing protein.
    
   0.854
Pdcd6
Programmed cell death protein 6.
   
 0.772
C0J52_11408
Uncharacterized protein.
   
 0.772
Smc1a
Structural maintenance of chromosomes protein 1A.
   
    0.626
UTP15
U3 small nucleolar RNA-associated protein 15.
   
    0.614
asf1
Histone chaperone asf1.
   
    0.600
C0J52_04509
WD_REPEATS_REGION domain-containing protein.
   
    0.597
smim12-a
Small integral membrane protein 12-A.
   
    0.596
snu13
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.594
Your Current Organism:
Blattella germanica
NCBI taxonomy Id: 6973
Other names: B. germanica, German cockroach
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.