C0J52_20876 protein (Blattella germanica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C0J52_20876

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

C0J52_13686

0.790

C0J52_04659

0.673

lrk-1

0.640

asf1

0.627

RpS28b

0.562

RPS15

0.562

HIRA

0.562

C0J52_17645

0.556

RpS24

0.549

Rps11

0.538

Your Current Organism:

Blattella germanica

NCBI taxonomy Id: 6973
Other names: B. germanica, German cockroach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0J52_04659	C0J52_20876	A0A2P8Z9X6	A0A2P8XZ95	Uncharacterized protein.	Uncharacterized protein.	0.673
C0J52_13686	C0J52_20876	A0A2P8YRH7	A0A2P8XZ95	Calx-beta domain-containing protein.	Uncharacterized protein.	0.790
C0J52_13686	lrk-1	A0A2P8YRH7	A0A2P8XDA1	Calx-beta domain-containing protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.853
C0J52_17645	C0J52_20876	A0A2P8Y7H8	A0A2P8XZ95	Uncharacterized protein.	Uncharacterized protein.	0.556
C0J52_17645	HIRA	A0A2P8Y7H8	A0A2P8ZJA8	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.992
C0J52_17645	asf1	A0A2P8Y7H8	A0A2P8Y1T4	Uncharacterized protein.	Histone chaperone asf1.	0.975
C0J52_20876	C0J52_04659	A0A2P8XZ95	A0A2P8Z9X6	Uncharacterized protein.	Uncharacterized protein.	0.673
C0J52_20876	C0J52_13686	A0A2P8XZ95	A0A2P8YRH7	Uncharacterized protein.	Calx-beta domain-containing protein.	0.790
C0J52_20876	C0J52_17645	A0A2P8XZ95	A0A2P8Y7H8	Uncharacterized protein.	Uncharacterized protein.	0.556
C0J52_20876	HIRA	A0A2P8XZ95	A0A2P8ZJA8	Uncharacterized protein.	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	0.562
C0J52_20876	RPS15	A0A2P8XZ95	A0A2P8XM27	Uncharacterized protein.	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.562
C0J52_20876	RpS24	A0A2P8XZ95	A0A2P8ZDU5	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.549
C0J52_20876	RpS28b	A0A2P8XZ95	A0A2P8XHZ7	Uncharacterized protein.	40S ribosomal protein S28.	0.562
C0J52_20876	Rps11	A0A2P8XZ95	A0A2P8Z1K1	Uncharacterized protein.	40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.	0.538
C0J52_20876	asf1	A0A2P8XZ95	A0A2P8Y1T4	Uncharacterized protein.	Histone chaperone asf1.	0.627
C0J52_20876	lrk-1	A0A2P8XZ95	A0A2P8XDA1	Uncharacterized protein.	Leucine-rich repeat serine/threonine-protein kinase 1.	0.640
HIRA	C0J52_17645	A0A2P8ZJA8	A0A2P8Y7H8	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.992
HIRA	C0J52_20876	A0A2P8ZJA8	A0A2P8XZ95	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Uncharacterized protein.	0.562
HIRA	asf1	A0A2P8ZJA8	A0A2P8Y1T4	Protein HIRA; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.	Histone chaperone asf1.	0.999
RPS15	C0J52_20876	A0A2P8XM27	A0A2P8XZ95	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.562