C0J52_13214 protein (Blattella germanica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

C0J52_13214

DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1292 aa)

Predicted Functional Partners:

C0J52_01675

0.995

DIMT1

0.994

TFB1M

0.993

C0J52_06943

0.992

C0J52_24071

0.977

POLR1B

0.935

C0J52_14722

0.804

Hmg20a

0.804

C0J52_09346

0.804

C0J52_00951

0.804

Your Current Organism:

Blattella germanica

NCBI taxonomy Id: 6973
Other names: B. germanica, German cockroach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0J52_00951	C0J52_06943	A0A2P8ZAR0	A0A2P8YEL6	Uncharacterized protein.	BUD22 domain-containing protein.	0.678
C0J52_00951	C0J52_13214	A0A2P8ZAR0	A0A2P8YFE1	Uncharacterized protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.804
C0J52_00951	DIMT1	A0A2P8ZAR0	A0A2P8XP70	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.739
C0J52_00951	POLR1B	A0A2P8ZAR0	A0A2P8XIL6	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.686
C0J52_00951	TFB1M	A0A2P8ZAR0	A0A2P8YBT2	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.678
C0J52_01675	C0J52_06943	A0A2P8ZEP3	A0A2P8YEL6	HMG box domain-containing protein.	BUD22 domain-containing protein.	0.804
C0J52_01675	C0J52_13214	A0A2P8ZEP3	A0A2P8YFE1	HMG box domain-containing protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.995
C0J52_01675	DIMT1	A0A2P8ZEP3	A0A2P8XP70	HMG box domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.750
C0J52_01675	POLR1B	A0A2P8ZEP3	A0A2P8XIL6	HMG box domain-containing protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.686
C0J52_01675	TFB1M	A0A2P8ZEP3	A0A2P8YBT2	HMG box domain-containing protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.821
C0J52_06943	C0J52_00951	A0A2P8YEL6	A0A2P8ZAR0	BUD22 domain-containing protein.	Uncharacterized protein.	0.678
C0J52_06943	C0J52_01675	A0A2P8YEL6	A0A2P8ZEP3	BUD22 domain-containing protein.	HMG box domain-containing protein.	0.804
C0J52_06943	C0J52_09346	A0A2P8YEL6	A0A2P8ZAG1	BUD22 domain-containing protein.	Uncharacterized protein.	0.678
C0J52_06943	C0J52_13214	A0A2P8YEL6	A0A2P8YFE1	BUD22 domain-containing protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.992
C0J52_06943	C0J52_14722	A0A2P8YEL6	A0A2P8YSF6	BUD22 domain-containing protein.	HMG box domain-containing protein.	0.678
C0J52_06943	Hmg20a	A0A2P8YEL6	A0A2P8Z7C0	BUD22 domain-containing protein.	High mobility group protein 20A.	0.678
C0J52_09346	C0J52_06943	A0A2P8ZAG1	A0A2P8YEL6	Uncharacterized protein.	BUD22 domain-containing protein.	0.678
C0J52_09346	C0J52_13214	A0A2P8ZAG1	A0A2P8YFE1	Uncharacterized protein.	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.	0.804
C0J52_09346	DIMT1	A0A2P8ZAG1	A0A2P8XP70	Uncharacterized protein.	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.	0.739
C0J52_09346	POLR1B	A0A2P8ZAG1	A0A2P8XIL6	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.686

page 1 of 4

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About