SDR-1_7 protein (Blattella germanica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDR-1_7

Farnesol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (242 aa)

Predicted Functional Partners:

cyb5r4

0.669

Fdxh

0.645

OXSM_1

0.557

OXSM_0

0.557

C0J52_06103

0.529

beg

0.523

ECI2

0.512

Egfr

0.512

Coq3

0.502

C0J52_19120

0.494

Your Current Organism:

Blattella germanica

NCBI taxonomy Id: 6973
Other names: B. germanica, German cockroach

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C0J52_06103	Coq3	A0A2P8Z6S8	A0A2P8Z688	Uncharacterized protein.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.653
C0J52_06103	ECI2	A0A2P8Z6S8	A0A2P8XM77	Uncharacterized protein.	Enoyl-CoA delta isomerase 2.	0.748
C0J52_06103	Fdxh	A0A2P8Z6S8	A0A2P8ZJM9	Uncharacterized protein.	Adrenodoxin-like protein.	0.968
C0J52_06103	OXSM_0	A0A2P8Z6S8	A0A2P8Y8P2	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.997
C0J52_06103	OXSM_1	A0A2P8Z6S8	A0A2P8XAD4	Uncharacterized protein.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.997
C0J52_06103	SDR-1_7	A0A2P8Z6S8	A0A2P8YIU3	Uncharacterized protein.	Farnesol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.529
C0J52_06103	beg	A0A2P8Z6S8	A0A2P8XRG2	Uncharacterized protein.	Putative malonyl-CoA-acyl carrier protein transacylase.	0.999
C0J52_06103	cyb5r4	A0A2P8Z6S8	A0A2P8YHY3	Uncharacterized protein.	Cytochrome b5 reductase 4.	0.621
C0J52_19120	SDR-1_7	A0A2P8YAT1	A0A2P8YIU3	CS domain-containing protein.	Farnesol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.494
C0J52_19120	cyb5r4	A0A2P8YAT1	A0A2P8YHY3	CS domain-containing protein.	Cytochrome b5 reductase 4.	0.584
Coq3	C0J52_06103	A0A2P8Z688	A0A2P8Z6S8	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Uncharacterized protein.	0.653
Coq3	Fdxh	A0A2P8Z688	A0A2P8ZJM9	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Adrenodoxin-like protein.	0.778
Coq3	OXSM_0	A0A2P8Z688	A0A2P8Y8P2	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.847
Coq3	OXSM_1	A0A2P8Z688	A0A2P8XAD4	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.847
Coq3	SDR-1_7	A0A2P8Z688	A0A2P8YIU3	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Farnesol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.502
ECI2	C0J52_06103	A0A2P8XM77	A0A2P8Z6S8	Enoyl-CoA delta isomerase 2.	Uncharacterized protein.	0.748
ECI2	Fdxh	A0A2P8XM77	A0A2P8ZJM9	Enoyl-CoA delta isomerase 2.	Adrenodoxin-like protein.	0.737
ECI2	OXSM_0	A0A2P8XM77	A0A2P8Y8P2	Enoyl-CoA delta isomerase 2.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.688
ECI2	OXSM_1	A0A2P8XM77	A0A2P8XAD4	Enoyl-CoA delta isomerase 2.	3-oxoacyl-[acyl-carrier-protein] synthase.	0.688
ECI2	SDR-1_7	A0A2P8XM77	A0A2P8YIU3	Enoyl-CoA delta isomerase 2.	Farnesol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.512