Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AEM77518.1 | AEM77519.1 | Thewi_0002 | Thewi_0003 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | 0.875 |
| AEM77518.1 | AEM77521.1 | Thewi_0002 | Thewi_0005 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: tbo:Thebr_0005 hypothetical protein. | 0.801 |
| AEM77518.1 | AEM77522.1 | Thewi_0002 | Thewi_0006 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | PFAM: Glycoside hydrolase, family 31; KEGG: tbo:Thebr_0006 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. | 0.665 |
| AEM77518.1 | recF | Thewi_0002 | Thewi_0004 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.968 |
| AEM77519.1 | AEM77518.1 | Thewi_0003 | Thewi_0002 | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.875 |
| AEM77519.1 | AEM77521.1 | Thewi_0003 | Thewi_0005 | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | KEGG: tbo:Thebr_0005 hypothetical protein. | 0.830 |
| AEM77519.1 | AEM77522.1 | Thewi_0003 | Thewi_0006 | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | PFAM: Glycoside hydrolase, family 31; KEGG: tbo:Thebr_0006 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. | 0.721 |
| AEM77519.1 | recF | Thewi_0003 | Thewi_0004 | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.928 |
| AEM77521.1 | AEM77518.1 | Thewi_0005 | Thewi_0002 | KEGG: tbo:Thebr_0005 hypothetical protein. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.801 |
| AEM77521.1 | AEM77519.1 | Thewi_0005 | Thewi_0003 | KEGG: tbo:Thebr_0005 hypothetical protein. | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | 0.830 |
| AEM77521.1 | AEM77522.1 | Thewi_0005 | Thewi_0006 | KEGG: tbo:Thebr_0005 hypothetical protein. | PFAM: Glycoside hydrolase, family 31; KEGG: tbo:Thebr_0006 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. | 0.756 |
| AEM77521.1 | AEM77626.1 | Thewi_0005 | Thewi_0116 | KEGG: tbo:Thebr_0005 hypothetical protein. | KEGG: tbo:Thebr_2188 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted. | 0.472 |
| AEM77521.1 | AEM78703.1 | Thewi_0005 | Thewi_1280 | KEGG: tbo:Thebr_0005 hypothetical protein. | KEGG: tbo:Thebr_1161 sporulation protein YtfJ; TIGRFAM: Sporulation protein YtfJ; PFAM: Sporulation protein YtfJ. | 0.536 |
| AEM77521.1 | AEM78742.1 | Thewi_0005 | Thewi_1319 | KEGG: tbo:Thebr_0005 hypothetical protein. | Tyrosine recombinase xerC; KEGG: tbo:Thebr_1209 integrase family protein; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Belongs to the 'phage' integrase family. | 0.490 |
| AEM77521.1 | AEM78887.1 | Thewi_0005 | Thewi_1465 | KEGG: tbo:Thebr_0005 hypothetical protein. | UPF0296 protein; KEGG: tbo:Thebr_1354 hypothetical protein; HAMAP: UPF0296 protein; PFAM: Protein of unknown function DUF370; Belongs to the RemA family. | 0.516 |
| AEM77521.1 | AEM79881.1 | Thewi_0005 | Thewi_2556 | KEGG: tbo:Thebr_0005 hypothetical protein. | Hypothetical protein; Manually curated; KEGG: tbo:Thebr_0191 germination protein YpeB. | 0.469 |
| AEM77521.1 | AEM80016.1 | Thewi_0005 | Thewi_2701 | KEGG: tbo:Thebr_0005 hypothetical protein. | KEGG: tbo:Thebr_2317 hypothetical protein. | 0.485 |
| AEM77521.1 | recF | Thewi_0005 | Thewi_0004 | KEGG: tbo:Thebr_0005 hypothetical protein. | DNA replication and repair protein recF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP; Belongs to the RecF family. | 0.879 |
| AEM77522.1 | AEM77518.1 | Thewi_0006 | Thewi_0002 | PFAM: Glycoside hydrolase, family 31; KEGG: tbo:Thebr_0006 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.665 |
| AEM77522.1 | AEM77519.1 | Thewi_0006 | Thewi_0003 | PFAM: Glycoside hydrolase, family 31; KEGG: tbo:Thebr_0006 glycoside hydrolase family 31; Belongs to the glycosyl hydrolase 31 family. | TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4. | 0.721 |
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