STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM77638.1KEGG: tmt:Tmath_0163 hypothetical protein. (375 aa)    
Predicted Functional Partners:
sigI
RNA polymerase sigma-I factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; Belongs to the sigma-70 factor family. SigI subfamily.
 
 
 0.991
AEM77637.1
S-layer domain-containing protein; PFAM: S-layer homology region; KEGG: tit:Thit_0105 S-layer domain protein.
 
     0.907
AEM77826.1
KEGG: thx:Thet_0285 hypothetical protein.
 
     0.723
AEM78304.1
PFAM: Protein of unknown function DUF2143; KEGG: tit:Thit_0724 protein of unknown function DUF2143.
  
     0.669
AEM79971.1
YycH family protein; PFAM: YycH; KEGG: tit:Thit_2309 YycH family protein.
  
     0.640
AEM79149.1
KEGG: tbo:Thebr_0723 hypothetical protein.
  
     0.596
AEM79870.1
PFAM: Major facilitator superfamily MFS-1; KEGG: tbo:Thebr_0203 major facilitator superfamily protein.
  
     0.585
AEM78702.1
KEGG: tbo:Thebr_1160 hypothetical protein.
  
     0.532
AEM78790.1
KEGG: tbo:Thebr_1257 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3.
  
 
 0.526
AEM78389.1
KEGG: tmt:Tmath_0849 putative transmembrane anti-sigma factor.
  
     0.512
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.