STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM77809.1Transcriptional regulator, DeoR family; PFAM: Putative sugar-binding region; RNA polymerase sigma factor 70, region 4 type 2; KEGG: cbi:CLJ_B3726 putative glucitol operon regulator. (319 aa)    
Predicted Functional Partners:
AEM79372.1
KEGG: thx:Thet_1891 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; PFAM: Dak kinase.
     0.823
AEM77810.1
PFAM: Glucitol operon activator; KEGG: cbf:CLI_3600 glucitol operon activator protein.
 
     0.813
AEM77811.1
KEGG: cbf:CLI_3599 PTS system, glucitol/sorbitol-specific, IIC component; TIGRFAM: Phosphotransferase system, enzyme II sorbitol-specific factor; PFAM: Phosphotransferase system, enzyme II sorbitol-specific factor.
 
     0.767
AEM77812.1
KEGG: cbf:CLI_3598 PTS system, glucitol/sorbitol-specific, IIBC component; TIGRFAM: Phosphotransferease, sorbitol phosphotransferase enzyme II; PFAM: Sorbitol phosphotransferase enzyme II, N-terminal; Sorbitol phosphotransferase enzyme II, C-terminal.
 
     0.683
AEM77808.1
PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: cbk:CLL_A0401 sorbitol-6-phosphate 2-dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.583
AEM77815.1
PFAM: Phosphotransferase system, glucitol/sorbitol-specific IIA component; KEGG: cbf:CLI_3597 PTS system, glucitol/sorbitol-specific, IIA component.
 
     0.552
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
   
 0.424
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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