STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM77899.1Ferric uptake regulator, Fur family; PFAM: Ferric-uptake regulator; KEGG: tbo:Thebr_1970 ferric-uptake regulator; Belongs to the Fur family. (138 aa)    
Predicted Functional Partners:
AEM77896.1
ABC-type transporter, integral membrane subunit; PFAM: ABC-3; KEGG: tbo:Thebr_1973 ABC-3 protein.
 
  
 0.883
AEM77897.1
KEGG: tbo:Thebr_1972 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
  
 0.871
AEM77898.1
ABC-type metal ion transporter, periplasmic subunit; PFAM: ABC transporter metal-binding lipoprotein; KEGG: tbo:Thebr_1971 periplasmic solute-binding protein.
 
  
 0.871
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.541
sigA
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.529
AEM77900.1
KEGG: tbo:Thebr_1969 ATPase; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core.
  
    0.508
AEM77901.1
PFAM: Protein of unknown function DUF58; KEGG: tit:Thit_0325 protein of unknown function DUF58.
       0.465
AEM77902.1
KEGG: tit:Thit_0326 hypothetical protein.
       0.465
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.420
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.418
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.