STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78157.1Cell wall hydrolase/autolysin; KEGG: tit:Thit_0595 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Copper amine oxidase-like, N-terminal; SMART: Cell wall hydrolase/autolysin, catalytic. (589 aa)    
Predicted Functional Partners:
AEM79548.1
TIGRFAM: N-acetylmuramoyl-L-alanine amidase CwlD; PFAM: Cell wall hydrolase/autolysin, catalytic; KEGG: tbo:Thebr_0460 N-acetylmuramoyl-L-alanine amidase CwlD; SMART: Cell wall hydrolase/autolysin, catalytic.
  
  
 
0.917
AEM79702.1
Manually curated; PFAM: Cell wall hydrolase/autolysin, catalytic.
  
  
 
0.914
AEM79437.1
KEGG: tbo:Thebr_0498 outer membrane lipoprotein-sorting protein-like protein.
  
 
   0.677
AEM77940.1
Rhomboid family protein; PFAM: Peptidase S54, rhomboid; KEGG: thx:Thet_0375 rhomboid family protein.
  
   0.665
AEM78581.1
KEGG: tmt:Tmath_1065 SpoIID/LytB domain protein; TIGRFAM: Sporulation stage II protein D, amidase enhancer LytB; PFAM: Sporulation stage II protein D, amidase enhancer LytB N-terminal.
 
  
 0.659
AEM79367.1
KEGG: thx:Thet_1886 hypothetical protein.
 
     0.645
AEM79914.1
S-layer domain-containing protein; PFAM: S-layer homology region; KEGG: tmt:Tmath_2162 S-layer domain protein.
 
     0.601
AEM77680.1
S-layer domain-containing protein; PFAM: S-layer homology region; KEGG: tte:TTE0166 S-layer-like domain-containing protein.
  
     0.558
AEM78160.1
Phosphodiesterase, MJ0936 family; KEGG: tbo:Thebr_1722 phosphodiesterase; TIGRFAM: Uncharacterised protein family UPF0025; PFAM: Metallophosphoesterase.
  
    0.546
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.539
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.