Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEM78214.1KEGG: ttm:Tthe_2549 hypothetical protein. (107 aa)    
Predicted Functional Partners:
AEM78215.1
KEGG: ttm:Tthe_2548 hypothetical protein.
 
     0.938
AEM78268.1
YcfA family protein; PFAM: YcfA-like; KEGG: ate:Athe_2005 YcfA family protein.
  
     0.540
AEM78368.1
PFAM: Protein of unknown function DUF86; KEGG: tbo:Thebr_1517 hypothetical protein.
  
     0.479
AEM78267.1
PFAM: Uncharacterised protein family UPF0150; KEGG: tmt:Tmath_0737 protein of unknown function UPF0150.
  
     0.443
AEM78217.1
KEGG: tmt:Tmath_0712 hypothetical protein.
 
     0.423
AEM78216.1
PFAM: AAA-ATPase-like; Protein of unknown function DUF1703; KEGG: thx:Thet_0645 AAA-ATPase-like protein.
       0.417
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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