STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78445.1TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; PFAM: Soluble ligand binding domain; Helix-hairpin-helix motif; KEGG: tmt:Tmath_0907 competence protein ComEA helix-hairpin-helix repeat protein; SMART: Helix-hairpin-helix DNA-binding motif, class 1. (204 aa)    
Predicted Functional Partners:
AEM78636.1
KEGG: tmt:Tmath_1113 type II secretion system F domain protein; manually curated; PFAM: Type II secretion system F domain.
  
  
 0.809
AEM78458.1
KEGG: tbo:Thebr_1441 DNA internalization-like competence protein ComEC/Rec2; TIGRFAM: Competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein.
 
  
 0.763
AEM78634.1
KEGG: tbo:Thebr_1094 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core.
  
  
 0.742
cinA
KEGG: tbo:Thebr_1221 competence/damage-inducible protein CinA; TIGRFAM: Competence-induced protein CinA; CinA, C-terminal; PFAM: CinA, C-terminal; Molybdopterin binding; Belongs to the CinA family.
     
 0.633
AEM78446.1
KEGG: tit:Thit_0866 hypothetical protein.
  
    0.622
AEM78638.1
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
   
  
 0.618
AEM78444.1
PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: tbo:Thebr_1457 serine-type D-Ala-D-Ala carboxypeptidase.
     
 0.604
AEM78294.1
KEGG: tbo:Thebr_1588 LytR/CpsA family cell envelope-related function transcriptional attenuator; TIGRFAM: Cell envelope-related transcriptional attenuator; PFAM: Cell envelope-related transcriptional attenuator.
 
     0.544
AEM78018.1
PFAM: Phosphoribosyltransferase; KEGG: tbo:Thebr_1833 phosphoribosyltransferase.
  
  
 0.502
polA
5'-3' exonuclease, resolvase-like domain-containing protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
   
 0.462
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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