STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78486.1PFAM: Transposase, IS4-like; KEGG: tbo:Thebr_1887 transposase IS4 family protein. (425 aa)    
Predicted Functional Partners:
AEM80006.1
Helix-turn-helix domain protein; KEGG: tit:Thit_2376 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; Tetratricopeptide repeat.
  
    0.567
AEM79367.1
KEGG: thx:Thet_1886 hypothetical protein.
 
     0.537
AEM79359.1
KEGG: tbo:Thebr_0569 hypothetical protein.
  
     0.504
era
GTP-binding protein Era-like-protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.500
AEM77584.1
PFAM: Beta-galactosidase trimerisation; Glycoside hydrolase, family 5; KEGG: tbo:Thebr_2228 beta-galactosidase trimerisation domain-containing protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.466
AEM79744.1
KEGG: tbo:Thebr_2259 hypothetical protein.
  
     0.446
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
       0.432
recO
DNA repair protein recO; Involved in DNA repair and RecF pathway recombination.
       0.432
AEM79451.1
KEGG: thx:Thet_2276 hypothetical protein.
  
     0.418
AEM78490.1
Ubiquitin-associated- domain-containing protein; PFAM: Ubiquitin-associated/translation elongation factor EF1B, N-terminal; KEGG: tbo:Thebr_1390 ubiquitin-associated-domain-containing protein.
       0.415
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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