STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78663.1PFAM: Protein of unknown function DUF322; KEGG: tbo:Thebr_1123 hypothetical protein. (134 aa)    
Predicted Functional Partners:
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
    0.722
folD
Bifunctional protein folD; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
  
    0.658
AEM78662.1
KEGG: thx:Thet_1371 hypothetical protein.
  
    0.654
AEM78659.1
KEGG: thx:Thet_1374 stage III sporulation protein AE; TIGRFAM: Sporulation stage III, protein AE; PFAM: Sporulation stage III, protein AE.
 
    0.649
xseA
Exodeoxyribonuclease 7 large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
       0.644
xseB
Exodeoxyribonuclease 7 small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
       0.639
AEM78668.1
PFAM: Polyprenyl synthetase; KEGG: tbo:Thebr_1128 polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
       0.639
AEM78661.1
TIGRFAM: Sporulation stage III, protein AG; KEGG: thx:Thet_1372 stage III sporulation protein AG.
       0.613
AEM78660.1
KEGG: thx:Thet_1373 stage III sporulation protein AF; TIGRFAM: Sporulation stage III, protein AF; PFAM: Sporulation stage III, protein AF.
  
    0.604
AEM78658.1
KEGG: tbo:Thebr_1118 stage III sporulation protein AD; TIGRFAM: Sporulation stage III, protein AD; PFAM: Sporulation stage III, protein AD.
  
    0.595
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.