STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78764.1Hypothetical protein; Manually curated; KEGG: tbo:Thebr_1231 polysaccharide deacetylase. (238 aa)    
Predicted Functional Partners:
AEM79726.1
PFAM: Glycosyl transferase, family 2; KEGG: aoe:Clos_0614 glycosyl transferase family protein.
  
 0.909
AEM78761.1
KEGG: tbo:Thebr_1228 sporulation protein, YlmC/YmxH family; TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel.
 
     0.772
AEM78763.1
PFAM: Peptidase M16, N-terminal; Peptidase M16, C-terminal; KEGG: tbo:Thebr_1230 processing peptidase.
  
    0.702
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family.
       0.673
AEM78378.1
KEGG: tbo:Thebr_1512 glycoside hydrolase family 18; PFAM: Glycoside hydrolase, family 18, catalytic domain; SMART: Chitinase II.
 
    
 0.668
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
       0.584
AEM79549.1
KEGG: tbo:Thebr_0459 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup.
    
 0.577
AEM78760.1
KEGG: tbo:Thebr_1227 aspartate kinase; TIGRFAM: Aspartate kinase region; PFAM: Aspartate/glutamate/uridylate kinase; Belongs to the aspartokinase family.
       0.486
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
       0.460
AEM79145.1
PFAM: Glycosyl transferase, family 2; KEGG: tbo:Thebr_0728 family 2 glycosyl transferase.
  
  
 0.437
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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