STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78788.1KEGG: tbo:Thebr_1255 hypothetical protein. (94 aa)    
Predicted Functional Partners:
AEM78789.1
PFAM: Protein of unknown function DUF342; KEGG: thx:Thet_1237 hypothetical protein.
       0.761
AEM78790.1
KEGG: tbo:Thebr_1257 FliA/WhiG family RNA polymerase sigma factor; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3.
       0.735
cheD
CheD, stimulates methylation of MCP proteins; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
       0.693
AEM78792.1
CheC, inhibitor of MCP methylation; PFAM: CheC-like protein; KEGG: tbo:Thebr_1259 CheC domain-containing protein.
       0.693
AEM78793.1
CheW protein; KEGG: tbo:Thebr_1260 CheW domain-containing protein; PFAM: CheW-like protein; SMART: CheW-like protein.
       0.693
AEM78796.1
PFAM: Type IV pilus assembly PilZ; KEGG: thx:Thet_1230 type IV pilus assembly PilZ.
       0.666
AEM78797.1
PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: thx:Thet_1229 cobyrinic acid a,c-diamide synthase.
       0.666
AEM78798.1
Flagellar biosynthetic protein FlhF; TIGRFAM: Signal-recognition particle (SRP)-type GTPase; PFAM: Signal recognition particle, SRP54 subunit, GTPase; KEGG: tbo:Thebr_1265 flagellar biosynthetic protein FlhF; SMART: ATPase, AAA+ type, core.
       0.666
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
       0.666
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
       0.661
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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