STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78866.1KEGG: tbo:Thebr_1333 DegV family protein; TIGRFAM: DegV; PFAM: DegV. (280 aa)    
Predicted Functional Partners:
AEM78868.1
KEGG: thx:Thet_1158 DAK2 domain fusion protein YloV; TIGRFAM: DAK2 domain-containing protein YloV; PFAM: Dak phosphatase.
 
 0.998
AEM78869.1
PFAM: Protein of unknown function DUF322; KEGG: tbo:Thebr_1336 hypothetical protein.
 
    0.887
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.756
rpmB
TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: thx:Thet_1156 50S ribosomal protein L28; PFAM: Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.514
AEM78865.1
PFAM: Small acid-soluble spore protein, alpha/beta-type; KEGG: tbo:Thebr_1332 alpha/beta type small acid-soluble spore protein.
       0.509
AEM77519.1
TIGRFAM: YaaA protein, S4 domain-containing; PFAM: RNA-binding S4; KEGG: tbo:Thebr_0003 S4 domain-containing protein YaaA; SMART: RNA-binding S4.
  
     0.417
AEM78861.1
KEGG: tbo:Thebr_1328 hypothetical protein.
 
     0.402
AEM77752.1
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
 
    0.400
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.