STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM78972.1KEGG: thx:Thet_0964 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR. (146 aa)    
Predicted Functional Partners:
AEM78970.1
PFAM: ABC-2 type transporter; KEGG: ttm:Tthe_1165 ABC-2 type transporter.
 
    0.744
AEM79856.1
Regulatory protein MarR; Manually curated; PFAM: HTH transcriptional regulator, MarR; KEGG: tbo:Thebr_0215 regulatory protein MarR; SMART: HTH transcriptional regulator, MarR.
  
     0.725
AEM78971.1
KEGG: ttm:Tthe_1166 ABC transporter related; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
  
 0.712
AEM78969.1
PFAM: Major facilitator superfamily MFS-1; KEGG: thx:Thet_0966 drug resistance transporter EmrB/QacA subfamily.
 
  
 0.656
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.506
AEM78973.1
PFAM: SEC-C motif; KEGG: thx:Thet_0963 sec-C motif domain-containing protein.
       0.483
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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