STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM79227.1KEGG: thx:Thet_1782 radical SAM domain-containing protein; PFAM: Radical SAM; Biotin/thiamin synthesis-associated protein; SMART: Elongator protein 3/MiaB/NifB. (349 aa)    
Predicted Functional Partners:
AEM79799.1
TIGRFAM: Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; KEGG: tit:Thit_2142 small GTP-binding protein; SMART: Ras small GTPase, Ras type.
   
 0.989
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
 
 0.974
AEM78409.1
KEGG: tbo:Thebr_1491 hydrogenase, Fe-only; TIGRFAM: Iron hydrogenase, subset; PFAM: Iron hydrogenase, large subunit, C-terminal; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Iron hydrogenase, small subunit-like.
 
  
 0.887
AEM78947.1
KEGG: tbo:Thebr_0898 hypothetical protein.
 
  
 0.840
AEM79698.1
PFAM: Aminotransferase, class I/II; KEGG: tte:TTE2406 7-keto-8-aminopelargonate synthetase and related enzyme.
  
  
 0.827
AEM78136.1
KEGG: tbo:Thebr_1743 biotin and thiamin synthesis associated; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; SMART: Elongator protein 3/MiaB/NifB.
 
  
0.658
AEM77537.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.634
ribBA
GTP cyclohydrolase-2; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
      
 0.615
AEM79842.1
KEGG: tit:Thit_2175 putative PAS/PAC sensor protein; manually curated; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup.
 
  
 0.613
AEM79347.1
Putative PAS/PAC sensor protein; TIGRFAM: PAS; PFAM: Iron hydrogenase, large subunit, C-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Putative Fe-S cluster; PAS fold; KEGG: tte:TTE0697 ferredoxin 2; SMART: PAS.
 
  
 0.608
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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