STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM79471.1KEGG: dsy:DSY1510 hypothetical protein; Belongs to the uroporphyrinogen decarboxylase family. (370 aa)    
Predicted Functional Partners:
AEM79467.1
KEGG: dtu:Dtur_0731 uroporphyrinogen decarboxylase (URO-D); manually curated; PFAM: Uroporphyrinogen decarboxylase (URO-D); Belongs to the uroporphyrinogen decarboxylase family.
 
 
 0.963
AEM77928.1
KEGG: tmt:Tmath_0432 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase; Tetrapyrrole biosynthesis, uroporphyrinogen III synthase.
  
 
 0.959
AEM79472.1
PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: cpo:COPRO5265_1498 pts system mannose-specific eiiab component (eiiab-man).
       0.773
AEM79468.1
KEGG: ate:Athe_2582 methionine synthase; TIGRFAM: Corrinoid methyltransferase, Methanosarcina species; PFAM: Cobalamin (vitamin B12)-binding; Methionine synthase, cobalamin (vitamin B12)-binding module, cap.
 
  
 0.695
AEM79470.1
Hypothetical protein; Manually curated.
 
    0.669
AEM79466.1
KEGG: ttm:Tthe_2447 vitamin B12 dependent methionine synthase activation region; manually curated; PFAM: Vitamin B12 dependent methionine synthase, activation region; Ferredoxin.
 
    0.647
AEM78557.1
PFAM: Vitamin B12 dependent methionine synthase, activation region; Ferredoxin; KEGG: thx:Thet_1464 vitamin B12 dependent methionine synthase activation region.
 
    0.632
AEM79469.1
Transcriptional regulator, AraC family; KEGG: hor:Hore_15370 helix-turn-helix-domain containing protein AraC type; PFAM: Helix-turn-helix, AraC type; Transcriptional regulator, histidine kinase sensor, N-terminal; SMART: Helix-turn-helix, AraC domain.
 
   
 0.624
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
  
 
 0.594
polA
5'-3' exonuclease, resolvase-like domain-containing protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.591
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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