STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM79492.1KEGG: tbo:Thebr_0489 peptidoglycan-binding domain 1 protein; PFAM: Peptidoglycan binding-like; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup. (350 aa)    
Predicted Functional Partners:
AEM79367.1
KEGG: thx:Thet_1886 hypothetical protein.
 
     0.753
AEM79494.1
KEGG: tbo:Thebr_0487 DNA polymerase LigD, ligase domain-containing protein; TIGRFAM: DNA polymerase LigD, ligase region; PFAM: ATP dependent DNA ligase, central.
 
     0.612
ku
DNA repair protein; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
     0.588
AEM79861.1
PFAM: NLP/P60; KEGG: tbo:Thebr_0211 NLP/P60 protein.
 
    0.543
AEM78157.1
Cell wall hydrolase/autolysin; KEGG: tit:Thit_0595 N-acetylmuramoyl-L-alanine amidase; PFAM: Cell wall hydrolase/autolysin, catalytic; Copper amine oxidase-like, N-terminal; SMART: Cell wall hydrolase/autolysin, catalytic.
 
     0.532
AEM78813.1
PFAM: Flagellar hook-length control protein; KEGG: tbo:Thebr_1280 flagellar hook-length control protein-like, C-terminal domain-containing protein.
  
     0.525
AEM78913.1
PFAM: Domain of unknown function DUF2357; Protein of unknown function DUF524; KEGG: thx:Thet_1112 hypothetical protein.
  
     0.508
AEM79914.1
S-layer domain-containing protein; PFAM: S-layer homology region; KEGG: tmt:Tmath_2162 S-layer domain protein.
  
     0.507
AEM77576.1
KEGG: tbo:Thebr_2239 pro-sigmaK processing inhibitor BofA; TIGRFAM: SigmaK-factor processing regulatory BofA; PFAM: SigmaK-factor processing regulatory BofA.
  
     0.505
AEM77826.1
KEGG: thx:Thet_0285 hypothetical protein.
  
     0.489
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.