Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEM79540.1PFAM: Transposase, IS4-like; KEGG: has:Halsa_0720 hypothetical protein. (551 aa)    
Predicted Functional Partners:
AEM79864.1
PFAM: Transposase, IS4-like; KEGG: transposase IS4 family protein.
  
     0.614
AEM79418.1
Hypothetical protein; Manually curated; KEGG: cki:Calkr_1251 transposase IS4 family protein.
  
     0.611
AEM79538.1
YbbR family protein; PFAM: YbbR-like; KEGG: thx:Thet_1982 YbbR family protein.
       0.522
dacA
Conserved hypothetical protein CHP00159; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
       0.522
AEM79541.1
PFAM: Transport-associated; KEGG: tmt:Tmath_1884 transport-associated protein.
       0.513
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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