STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM79665.1KEGG: tbo:Thebr_0324 hypothetical protein. (174 aa)    
Predicted Functional Partners:
AEM79664.1
KEGG: thx:Thet_2109 hypothetical protein.
 
     0.959
AEM79663.1
PFAM: Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; KEGG: tbo:Thebr_0326 shikimate/quinate 5-dehydrogenase.
 
     0.950
AEM78987.1
PFAM: Protein of unknown function DUF1614; KEGG: tbo:Thebr_0854 hypothetical protein.
  
     0.721
AEM79888.1
KEGG: tbo:Thebr_0184 molybdopterin-guanine dinucleotide biosynthesis protein A-like protein.
  
     0.719
AEM77642.1
KEGG: tbo:Thebr_2173 hypothetical protein.
  
     0.614
AEM78986.1
KEGG: thx:Thet_0948 stage II sporulation protein P; TIGRFAM: Sporulation stage II, protein P; PFAM: Sporulation stage II, protein P.
  
     0.597
AEM78461.1
PFAM: Membrane protein of unknown function; KEGG: tbo:Thebr_1438 hypothetical protein.
  
     0.593
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
       0.584
AEM79667.1
KEGG: tbo:Thebr_0322 germination protein, Ger(X)C family; TIGRFAM: Spore germination GerAC; PFAM: Spore germination GerAC.
 
     0.583
lysS
TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: thx:Thet_2106 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.552
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.