STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM79704.1GAF modulated sigma54 specific transcriptional regulator, Fis family; KEGG: tte:TTE0687 putative regulator of acetoin metabolism; PFAM: RNA polymerase sigma factor 54, interaction; GAF; PAS fold-4; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; PAS. (674 aa)    
Predicted Functional Partners:
AEM79091.1
KEGG: tbo:Thebr_0751 RNA polymerase sigma-54 factor, RpoN; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54.
 
  
 0.799
AEM79371.1
KEGG: tbo:Thebr_0557 dihydroxyacetone kinase, L subunit; TIGRFAM: Dihydroxyacetone kinase, subunit L; PFAM: Dak phosphatase.
    
 
 0.553
AEM79372.1
KEGG: thx:Thet_1891 dihydroxyacetone kinase, DhaK subunit; TIGRFAM: Dihydroxyacetone kinase DhaK, subunit 1; PFAM: Dak kinase.
    
 
 0.553
AEM79705.1
PFAM: Dehydrogenase, E1 component; KEGG: tte:TTE0688 thiamine pyrophosphate-dependent dehydrogenase, E1 component alpha subunit.
     
 0.478
AEM79706.1
Transketolase central region; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: tte:TTE0689 thiamine pyrophosphate-dependent dehydrogenase, E1 component beta subunit.
     
 0.416
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.