STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEM80021.1PFAM: Mechanosensitive ion channel MscS; KEGG: tbo:Thebr_2322 mechanosensitive ion channel protein MscS. (284 aa)    
Predicted Functional Partners:
AEM80020.1
PFAM: Protein of unknown function DUF951, bacterial; KEGG: tbo:Thebr_2321 hypothetical protein.
  
    0.714
AEM80022.1
KEGG: tbo:Thebr_2323 sporulation protein YyaC; TIGRFAM: Protein of unknown function DUF1256; PFAM: Protein of unknown function DUF1256.
       0.636
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
       0.565
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
  
    0.531
AEM80018.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
       0.530
AEM80015.1
PFAM: Protein of unknown function DUF2232, membrane; KEGG: tbo:Thebr_2316 hypothetical protein.
 
     0.515
AEM80014.1
KEGG: tbo:Thebr_2315 phosphoesterase RecJ domain-containing protein.
       0.444
polA
5'-3' exonuclease, resolvase-like domain-containing protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.433
ribBA
GTP cyclohydrolase-2; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
    0.412
AEM79860.1
PFAM: Alcohol dehydrogenase, iron-type; Aldehyde dehydrogenase; KEGG: thx:Thet_2299 iron-containing alcohol dehydrogenase.
 
  
 0.407
Your Current Organism:
Thermoanaerobacter wiegelii
NCBI taxonomy Id: 697303
Other names: T. wiegelii Rt8.B1, Thermoanaerobacter wiegelii Rt8.B1, Thermoanaerobacter wiegelii str. Rt8.B1, Thermoanaerobacter wiegelii strain Rt8.B1
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