STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylBXylulokinase; KEGG: cdf:CD3065 xylulose kinase; TIGRFAM: xylulokinase; PFAM: Carbohydrate kinase, FGGY-like. (507 aa)    
Predicted Functional Partners:
ADU23293.1
KEGG: hap:HAPS_1782 L-ribulose-5-phosphate 4-epimerase; TIGRFAM: L-ribulose-5-phosphate 4-epimerase; PFAM: class II aldolase/adducin family protein.
 
 
 0.964
ADU23414.1
TIGRFAM: ribulose-phosphate 3-epimerase; KEGG: eel:EUBELI_00723 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.951
ADU23535.1
PFAM: L-fucose isomerase-like-like; KEGG: cbe:Cbei_4681 L-fucose isomerase related protein.
 
  
 0.685
ADU21158.1
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cpy:Cphy_1132 putative solute-binding component of ABC transporter.
 
  
 0.680
ADU21765.1
KEGG: cac:CA_C2611 hypothetical protein.
  
  
 0.675
ADU23323.1
Hypothetical protein; KEGG: tna:CTN_1286 beta-lactamase domain protein.
     
 0.643
ADU23324.1
Hypothetical protein; KEGG: snc:HMPREF0837_11514 exoribonuclease R.
       0.636
ADU23584.1
KEGG: bsu:BSU33970 transcriptional repressor of the ara regulon (LacI family); PFAM: regulatory protein GntR HTH; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein GntR HTH.
 
 
 
 0.582
ADU21805.1
PFAM: aldo/keto reductase; oxidoreductase domain protein; Oxidoreductase domain; KEGG: bhy:BHWA1_01967 aldo/keto reductase.
 
  
 0.552
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
  
 
 0.517
Your Current Organism:
Ruminococcus albus 7 DSM 20455
NCBI taxonomy Id: 697329
Other names: R. albus 7 = DSM 20455, Ruminococcus albus 7, Ruminococcus albus 7 = DSM 20455, Ruminococcus albus DSM 20455, Ruminococcus albus DSM 20455 = 7
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