AJB41438.1 protein (Thermofilum adornatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AJB41438.1

Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN. (462 aa)

Predicted Functional Partners:

AJB41668.1

0.960

AJB42630.1

0.883

AJB41669.1

0.827

AJB41437.1

0.598

AJB41454.1

0.582

thiL

0.574

AJB41670.1

0.555

AJB41439.1

0.481

AJB41436.1

0.458

AJB41780.1

0.457

Your Current Organism:

Thermofilum adornatus

NCBI taxonomy Id: 697581
Other names: T. adornatus 1505, Thermofilum adornatus 1505

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AJB41436.1	AJB41437.1	TCARB_0364	TCARB_0365	Hypothetical protein.	Hypothetical protein.	0.479
AJB41436.1	AJB41438.1	TCARB_0364	TCARB_0366	Hypothetical protein.	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	0.458
AJB41437.1	AJB41436.1	TCARB_0365	TCARB_0364	Hypothetical protein.	Hypothetical protein.	0.479
AJB41437.1	AJB41438.1	TCARB_0365	TCARB_0366	Hypothetical protein.	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	0.598
AJB41438.1	AJB41436.1	TCARB_0366	TCARB_0364	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hypothetical protein.	0.458
AJB41438.1	AJB41437.1	TCARB_0366	TCARB_0365	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hypothetical protein.	0.598
AJB41438.1	AJB41439.1	TCARB_0366	TCARB_0367	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Threonyl/alanyl tRNA synthetase, SAD.	0.481
AJB41438.1	AJB41454.1	TCARB_0366	TCARB_0382	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Membrane-bound hydrogenase, NuoD subunit.	0.582
AJB41438.1	AJB41668.1	TCARB_0366	TCARB_0612	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	[NiFe] hydrogenase metallocenter assembly protein HypD.	0.960
AJB41438.1	AJB41669.1	TCARB_0366	TCARB_0613	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hypothetical protein.	0.827
AJB41438.1	AJB41670.1	TCARB_0366	TCARB_0614	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hydrogenase formation protein HypE.	0.555
AJB41438.1	AJB41780.1	TCARB_0366	TCARB_0726	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hydrogenase formation protein HypA.	0.457
AJB41438.1	AJB42630.1	TCARB_0366	TCARB_1588	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Hydrogenase formation protein HypF.	0.883
AJB41438.1	thiL	TCARB_0366	TCARB_1738	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	Thiamine-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.	0.574
AJB41439.1	AJB41438.1	TCARB_0367	TCARB_0366	Threonyl/alanyl tRNA synthetase, SAD.	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	0.481
AJB41454.1	AJB41438.1	TCARB_0382	TCARB_0366	Membrane-bound hydrogenase, NuoD subunit.	Phosphomethylpyrimidine kinase / Thiamin-phosphate synthase ThiN.	0.582
AJB41454.1	AJB41668.1	TCARB_0382	TCARB_0612	Membrane-bound hydrogenase, NuoD subunit.	[NiFe] hydrogenase metallocenter assembly protein HypD.	0.590
AJB41454.1	AJB41669.1	TCARB_0382	TCARB_0613	Membrane-bound hydrogenase, NuoD subunit.	Hypothetical protein.	0.538
AJB41454.1	AJB41670.1	TCARB_0382	TCARB_0614	Membrane-bound hydrogenase, NuoD subunit.	Hydrogenase formation protein HypE.	0.526
AJB41454.1	AJB41780.1	TCARB_0382	TCARB_0726	Membrane-bound hydrogenase, NuoD subunit.	Hydrogenase formation protein HypA.	0.800