Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJB41708.1YcfA family protein. (58 aa)    
Predicted Functional Partners:
AJB41707.1
Hypothetical protein.
 
 
 
 0.972
AJB41753.1
Hypothetical protein.
   
 
 0.718
AJB42606.1
Hypothetical protein, conserved, UPF0150 family.
   
 
 0.718
AJB41709.1
7,8 dihydropteroate synthase (methanopterin).
       0.470
AJB41705.1
Hypothetical protein.
 
     0.443
AJB41706.1
7,8 dihydropteroate synthase (methanopterin).
       0.426
Your Current Organism:
Thermofilum adornatus
NCBI taxonomy Id: 697581
Other names: T. adornatus 1505, Thermofilum adornatus 1505
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