Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AJB41859.1Bipolar DNA helicase. (559 aa)    
Predicted Functional Partners:
AJB41860.1
Hypothetical protein.
   
 
 0.930
AJB42082.1
Single-stranded exonuclease associated with Rad50/Mre11 complex.
   
 
 0.734
AJB41870.1
Hypothetical protein.
   
 
 0.704
AJB41871.1
Bipolar DNA helicase.
  
     0.660
AJB41858.1
Hypothetical protein.
       0.594
AJB41861.1
Uracil phosphoribosyltransferase.
       0.567
AJB42086.1
DNA double-strand break repair Rad50 ATPase.
 
   
 0.440
AJB42852.1
Hypothetical protein.
 
   
 0.422
Your Current Organism:
Thermofilum adornatus
NCBI taxonomy Id: 697581
Other names: T. adornatus 1505, Thermofilum adornatus 1505
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