Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
loading ...
currently showing
Neighborhood
Groups of genes that are frequently observed in each other's genomic neighborhood.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1V6NRS8
PITH domain-containing protein. (222 aa)
Predicted Functional Partners:
A0A1V6PAD0
Histone H2B; Belongs to the histone H2B family.
0.481
A0A1V6P656
Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.
0.467
Your Current Organism:
Penicillium decumbens
NCBI taxonomy Id: 69771 Other names: CBS 230.81, FRR 741, NRRL 741, P. decumbens