STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
G7K_2234-t1Uncharacterized protein. (695 aa)    
Predicted Functional Partners:
G7K_3714-t1
PAT1 domain-containing protein.
    
 0.936
LSM1
U6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation.
    
 0.936
G7K_4115-t1
Sm domain-containing protein.
    
 0.934
G7K_0082-t1
Nudix hydrolase domain-containing protein.
   
 0.912
G7K_0342-t1
PUA domain-containing protein.
    
   0.898
G7K_4688-t1
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
    
 0.862
G7K_0617-t1
Uncharacterized protein.
    
 0.804
G7K_4571-t1
Uncharacterized protein.
   
 
 0.782
G7K_3497-t1
Uncharacterized protein; Belongs to the RNR ribonuclease family.
    
 0.769
G7K_3948-t3
WD_REPEATS_REGION domain-containing protein.
    
 
 0.768
Your Current Organism:
Saitoella complicata
NCBI taxonomy Id: 698492
Other names: S. complicata NRRL Y-17804, Saitoella complicata CBS 7301, Saitoella complicata CCRC 22490, Saitoella complicata IAM 12963, Saitoella complicata JCM 7358, Saitoella complicata NBRC 10748, Saitoella complicata NRRL Y-17804
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.