STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilUTwitching motility protein. (371 aa)    
Predicted Functional Partners:
pilC
Type II secretory pathway, component PilC.
 
   
 0.786
pulF
Type II secretory pathway, component PulF.
 
   
 0.783
CCK77170.1
Type IV prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.783
pilM
Type 4 pilus assembly protein.
  
  
 0.766
gspF
General secretion pathway protein F.
 
   
 0.723
pilT
Pilus retraction ATPase, PilT.
 
  
0.702
pilQ
Type 4 pilus biogenesis protein.
  
   
 0.632
pilO
Type 4 pilus biogenesis protein.
 
  
 0.568
pilN
Type 4 pilus biogenesis protein.
  
  
 0.535
CCK74197.1
Conserved hypothetical protein.
  
    0.529
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.