STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCK74763.1Conserved hypothetical protein. (1072 aa)    
Predicted Functional Partners:
pilW
Type IV pilus assembly protein.
 
  
 0.970
pilE
Type 4 fimbrial biogenesis protein.
 
  
 0.950
pilV
Type IV pilus modification protein.
 
  
 0.947
CCK74764.1
Hypothetical protein.
       0.773
CCK74769.1
Type IV pilus biogenesis protein.
 
  
 0.761
CCK74770.1
Type IV pilus biogenesis protein.
 
  
 0.721
CCK74765.1
Hypothetical protein.
       0.697
mshP
MSHA biogenesis protein MshP.
  
  
 0.672
gspH
General secretion pathway protein H.
 
     0.653
CCK74544.1
Conserved hypothetical protein.
 
  
 0.649
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.