STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilSType IV pilus sensor protein. (518 aa)    
Predicted Functional Partners:
CCK74771.1
Sigma 54-dependent transcriptional activator containing CheY-like receiver domain.
 
 0.992
rpoN
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
     
 0.905
CCK74265.1
CheY-like receiver protein.
 
   0.838
pilH
Type IV pilus response regulator.
  
 
 
 0.817
cheA
Sensor histidine kinase/response regulator.
 
 
 
 0.786
CCK76218.1
Methyl-accepting chemotaxis protein.
  
   0.779
CCK74453.1
Sensor protein.
 
 
 
 0.730
CCK76518.1
Response regulator, CheY-like.
  
 
   0.721
CCK77821.1
Sensor protein.
 
 
 
 0.721
CCK77219.1
Sensor protein.
 
 
 
 0.720
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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