STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmfRibosome modulation factor. (64 aa)    
Predicted Functional Partners:
CCK74618.1
Probable Sigma 54 modulation protein/ribosomal protein S30EA.
   
 
 0.940
CCK75988.1
Conserved hypothetical protein.
  
     0.761
CCK78005.1
Conserved hypothetical protein.
  
     0.758
CCK75708.1
Conserved hypothetical protein.
  
     0.750
CCK76730.1
Conserved hypothetical protein.
   
    0.746
minE
Putative cell division topological specificity factor MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.744
CCK75201.1
Putative outer membrane protein, chaperone Skp (OmpH) family.
  
     0.704
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
 
 0.683
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
    
 
 0.679
CCK76019.1
Conserved hypothetical protein containing tetratricopeptide repeats.
  
    0.675
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.