STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCK77098.1Protein involved in aromatic hydrocarbon degradation. (503 aa)    
Predicted Functional Partners:
CCK74524.1
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.650
CCK77097.1
Translation initiation factor 1 (EIF-1/SUI1).
       0.496
cspE
Cold shock-like protein.
      
 0.443
CCK75657.1
Cold-shock domain family protein.
      
 0.443
CCK76040.1
Cold shock domain protein.
      
 0.443
CCK77391.1
Cold-shock DNA-binding family protein.
      
 0.443
CCK75379.1
Flagellin-like protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.424
CCK77099.1
Conserved hypothetical protein.
       0.407
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.