STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCK77613.1TRAP C4-dicarboxylate transport system permease DctM subunit. (692 aa)    
Predicted Functional Partners:
dctQ
TRAP C4-dicarboxylate transporter.
 
 
 0.890
dctP
TRAP dicarboxylate transporter.
 
  
 0.687
CCK76194.1
Long-chain fatty acid transport protein.
  
     0.670
CCK76195.1
Conserved hypothetical protein.
  
     0.609
CCK75335.1
Conserved hypothetical protein.
  
     0.598
CCK77601.1
Conserved hypothetical protein.
  
     0.560
CCK77614.1
Conserved hypothetical protein.
       0.559
CCK77514.1
Conserved hypothetical protein.
  
     0.547
gst
Glutathione S-transferase.
  
     0.536
CCK77615.1
Conserved hypothetical protein.
       0.511
Your Current Organism:
Oleispira antarctica
NCBI taxonomy Id: 698738
Other names: O. antarctica RB-8, Oleispira antarctica DSM 14852, Oleispira antarctica RB-8, Oleispira antarctica str. RB-8, Oleispira antarctica strain RB-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.