Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AXY_02090Hypothetical protein. (105 aa)    
Predicted Functional Partners:
AXY_02100
Putative phage terminase large subunit.
       0.791
AXY_02080
Hypothetical protein.
       0.616
AXY_02110
Putative phage portal protein.
       0.565
AXY_02130
Hypothetical protein.
       0.540
AXY_02150
Hypothetical protein.
       0.539
AXY_02120
Peptidase S14 family protein; Belongs to the peptidase S14 family.
       0.452
AXY_02140
Hypothetical protein.
       0.414
AXY_02160
Hypothetical protein.
       0.414
AXY_02170
Hypothetical protein.
       0.414
AXY_02180
Hypothetical protein.
       0.414
Your Current Organism:
Amphibacillus xylanus
NCBI taxonomy Id: 698758
Other names: A. xylanus NBRC 15112, Amphibacillus xylanus DSM 6626, Amphibacillus xylanus Ep01, Amphibacillus xylanus JCM 7361, Amphibacillus xylanus NBRC 15112, Amphibacillus xylanus str. NBRC 15112, Amphibacillus xylanus strain NBRC 15112
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