Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AXY_19760Putative AraC family transcriptional regulator. (251 aa)    
Predicted Functional Partners:
AXY_18540
Putative AraC family transcriptional regulator.
 
   0.800
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.773
AXY_05150
Putative AraC family transcriptional regulator.
 
 
 0.716
AXY_19750
Hypothetical protein.
 
    0.716
adhE
Acetaldehyde/alcohol dehydrogenase; Bifunctional protein; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.715
flhP
Putative flagellar hook-basal body complex protein FlhP.
    
   0.714
flhO
Putative flagellar hook-basal body complex protein FlhO.
    
   0.714
AXY_14410
Putative GntR family transcriptional regulator.
  
  
 0.686
treR
Trehalose operon transcriptional repressor.
  
  
 0.686
AXY_21470
NAD-dependent deacetylase; Protein synonym:regulatory protein SIR2 homolog.
  
    0.634
Your Current Organism:
Amphibacillus xylanus
NCBI taxonomy Id: 698758
Other names: A. xylanus NBRC 15112, Amphibacillus xylanus DSM 6626, Amphibacillus xylanus Ep01, Amphibacillus xylanus JCM 7361, Amphibacillus xylanus NBRC 15112, Amphibacillus xylanus str. NBRC 15112, Amphibacillus xylanus strain NBRC 15112
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