STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AXY_19760Putative AraC family transcriptional regulator. (251 aa)    
Predicted Functional Partners:
sigA
RNA polymerase sigma factor SigA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.855
AXY_18540
Putative AraC family transcriptional regulator.
 
 
 0.801
flhP
Putative flagellar hook-basal body complex protein FlhP.
   
   0.794
flhO
Putative flagellar hook-basal body complex protein FlhO.
   
   0.794
AXY_05150
Putative AraC family transcriptional regulator.
 
 
 0.746
AXY_19750
Hypothetical protein.
 
  
 0.712
AXY_21470
NAD-dependent deacetylase; Protein synonym:regulatory protein SIR2 homolog.
  
  
 0.712
AXY_14410
Putative GntR family transcriptional regulator.
  
  
 0.676
treR
Trehalose operon transcriptional repressor.
  
  
 0.676
AXY_21310
Putative AraC family transcriptional regulator.
 
 
0.636
Your Current Organism:
Amphibacillus xylanus
NCBI taxonomy Id: 698758
Other names: A. xylanus NBRC 15112, Amphibacillus xylanus DSM 6626, Amphibacillus xylanus Ep01, Amphibacillus xylanus JCM 7361, Amphibacillus xylanus NBRC 15112, Amphibacillus xylanus str. NBRC 15112, Amphibacillus xylanus strain NBRC 15112
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