STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB89142.1Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (373 aa)    
Predicted Functional Partners:
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.966
SMB89111.1
L-alanine dehydrogenase; InterPro IPR008141:IPR008143:IPR007886:IPR007698; COGs: COG0686 Alanine dehydrogenase; KEGG: chy:CHY_0666 alanine dehydrogenase; SPTR: Alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; PRIAM: Alanine dehydrogenase; TIGRFAM: alanine dehydrogenase; Belongs to the AlaDH/PNT family.
  
 
 0.953
SMB95242.1
L-alanine dehydrogenase; InterPro IPR008141:IPR007886:IPR007698:IPR008143; COGs: COG0686 Alanine dehydrogenase; KEGG: chy:CHY_0666 alanine dehydrogenase; SPTR: Alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; TIGRFAM: alanine dehydrogenase.
  
 
 0.945
ddl
D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
 
 0.920
SMC00006.1
InterPro IPR011095:IPR011761; COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; KEGG: dba:Dbac_1775 D-alanine--D-alanine ligase domain protein; SPTR: D-alanine--D-alanine ligase domain protein; PFAM: D-alanine--D-alanine ligase domain protein.
  
 
 0.887
SMB89432.1
Cyanophycin synthetase; InterProIPR011810:IPR011761:IPR018109:IPR003135:IPR 013221:IPR004101; COGs: COG0769 UDP-N-acetylmuramyl tripeptide synthase; KEGG: cyanophycin synthetase; SPTR: Cyanophycin synthetase; PFAM: Mur ligase middle domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; cytoplasmic peptidoglycan synthetase domain protein; TIGRFAM: cyanophycin synthetase; Belongs to the MurCDEF family.
  
 
 0.849
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
 
  
 0.780
SMB91049.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE; InterPro IPR003442; COGs: COG0802 ATPase or kinase; KEGG: mta:Moth_2160 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Uncharacterised protein family UPF0079, ATPase.
 
 
 0.759
SMC00129.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 
0.754
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.695
Your Current Organism:
Thermanaeromonas toyohensis
NCBI taxonomy Id: 698762
Other names: T. toyohensis ToBE, Thermanaeromonas toyohensis DSM 14490, Thermanaeromonas toyohensis ToBE, Thermanaeromonas toyohensis str. ToBE, Thermanaeromonas toyohensis strain ToBE, Thermoanaerobacter sp. ToBE
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