STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMB89324.1InterPro IPR006339:IPR007159; KEGG: mta:Moth_0047 AbrB family transcriptional regulator; SPTR: Transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain-containing protein; TIGRFAM: transcriptional regulator, AbrB family. (83 aa)    
Predicted Functional Partners:
SMB89514.1
Putative DeoR family transcriptional regulator, stage III sporulation protein D; InterPro IPR014208:IPR018356; KEGG: adg:Adeg_0086 sporulation transcriptional regulator SpoIIID; TIGRFAM: sporulation transcriptional regulator SpoIIID; SPTR: Transcription regulator of sigma-E/sigma-K-dependent gene spoIIID.
  
   
 0.754
SMB98549.1
Stage IV sporulation protein B/sporulation transcription factor Spo0A,TIGR02875; InterProIPR014219:IPR012052:IPR008763:IPR001789:IPR 014879:IPR001478; COGs: COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; KEGG: mta:Moth_1506 SpoIVB peptidase; SPTR: SpoIVB peptidase. Serine peptidase. MEROPS family S55; SMART: response regulator receiver; PFAM: peptidase S55 SpoIVB; response regulator receiver; Sporulation initiation factor Spo0A; TIGRFAM: sporulation transcription factor Spo0A; stage IV sporulation protein B.
  
     0.752
SMB98305.1
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.701
SMB99816.1
Spore germination protein KA; InterPro IPR004995; KEGG: mta:Moth_2042 GerA spore germination protein; SPTR: GerA spore germination protein; PFAM: GerA spore germination protein.
  
   
 0.697
SMB92303.1
Spore germination protein KA; InterPro IPR004995; KEGG: mta:Moth_1461 GerA spore germination protein; SPTR: GerA spore germination protein; PFAM: GerA spore germination protein.
  
   
 0.686
SMB90971.1
Spore germination protein; InterPro IPR004995; KEGG: mta:Moth_1014 GerA spore germination protein; SPTR: GerA spore germination protein; PFAM: GerA spore germination protein.
  
   
 0.670
spoIIAB
Stage II sporulation protein AB (anti-sigma F factor); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
  
 0.647
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.643
SMB92899.1
Stage II sporulation protein P; InterPro IPR010897; KEGG: mta:Moth_0578 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Stage II sporulation P family protein; TIGRFAM: stage II sporulation protein P.
  
     0.639
SMB89330.1
TatD DNase family protein; InterProIPR015991:IPR012278:IPR002195:IPR018228:IPR 001130; COGs: COG0084 Mg-dependent DNase; KEGG: mta:Moth_0049 TatD-related deoxyribonuclease; SPTR: TatD-related deoxyribonuclease; PFAM: TatD-related deoxyribonuclease; TIGRFAM: hydrolase, TatD family.
       0.622
Your Current Organism:
Thermanaeromonas toyohensis
NCBI taxonomy Id: 698762
Other names: T. toyohensis ToBE, Thermanaeromonas toyohensis DSM 14490, Thermanaeromonas toyohensis ToBE, Thermanaeromonas toyohensis str. ToBE, Thermanaeromonas toyohensis strain ToBE, Thermoanaerobacter sp. ToBE
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