STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000709085_00904Unannotated protein. (261 aa)    
Predicted Functional Partners:
GCA_000709085_02959
Unannotated protein.
 
 
 0.912
GCA_000709085_02958
Unannotated protein.
 
  
 0.895
GCA_000709085_00641
Unannotated protein.
 
  
 0.798
GCA_000709085_02294
Unannotated protein.
 
  
 0.793
GCA_000709085_02957
Unannotated protein.
 
  
 0.755
GCA_000709085_00643
Unannotated protein.
   
  
 0.711
GCA_000709085_02955
Unannotated protein.
  
  
 0.670
GCA_000709085_01227
Unannotated protein.
   
    0.617
GCA_000709085_00880
Unannotated protein.
 
    0.563
GCA_000709085_02954
Unannotated protein.
  
  
 0.555
Your Current Organism:
Virgibacillus alimentarius
NCBI taxonomy Id: 698769
Other names: JCM 16994, KACC 14624, V. alimentarius, Virgibacillus alimentarius Kim et al. 2011, Virgibacillus sp. J18, strain J18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.