STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000934755_01826Unannotated protein. (196 aa)    
Predicted Functional Partners:
GCA_000934755_01827
Unannotated protein.
       0.813
GCA_000934755_01828
Unannotated protein.
       0.805
GCA_000934755_01932
Unannotated protein.
    
  0.778
GCA_000934755_00780
Unannotated protein.
 
  
 0.769
GCA_000934755_00541
Unannotated protein.
    
  0.757
GCA_000934755_01167
Unannotated protein.
 
   
 0.756
GCA_000934755_00975
Unannotated protein.
 
     0.753
GCA_000934755_00555
Unannotated protein.
 
    0.714
GCA_000934755_02481
Unannotated protein.
 
   
 0.698
GCA_000934755_03433
Unannotated protein.
 
    0.698
Your Current Organism:
Desulfonatronovibrio magnus
NCBI taxonomy Id: 698827
Other names: D. magnus, DSM 24400, Desulfonatronovibrio magnus Sorokin et al. 2011, Desulfonatronovibrio sp. AHT22, UNIQEM U844, strain AHT22
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.