Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFH48011.1 | SFH48029.1 | SAMN05192551_101142 | SAMN05192551_101143 | Response regulator receiver domain-containing protein. | Chemotaxis protein CheC. | 0.962 |
SFH48011.1 | SFH48047.1 | SAMN05192551_101142 | SAMN05192551_101144 | Response regulator receiver domain-containing protein. | PAS domain S-box-containing protein. | 0.876 |
SFH48011.1 | SFH48068.1 | SAMN05192551_101142 | SAMN05192551_101145 | Response regulator receiver domain-containing protein. | Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.781 |
SFH48011.1 | SFH48086.1 | SAMN05192551_101142 | SAMN05192551_101146 | Response regulator receiver domain-containing protein. | Prepilin-type N-terminal cleavage/methylation domain-containing protein. | 0.682 |
SFH48011.1 | SFH48144.1 | SAMN05192551_101142 | SAMN05192551_101149 | Response regulator receiver domain-containing protein. | Prepilin-type N-terminal cleavage/methylation domain-containing protein. | 0.523 |
SFH48011.1 | SFH48164.1 | SAMN05192551_101142 | SAMN05192551_101150 | Response regulator receiver domain-containing protein. | Hypothetical protein. | 0.523 |
SFH48011.1 | SFH48184.1 | SAMN05192551_101142 | SAMN05192551_101151 | Response regulator receiver domain-containing protein. | Hypothetical protein. | 0.523 |
SFH48011.1 | SFH48208.1 | SAMN05192551_101142 | SAMN05192551_101152 | Response regulator receiver domain-containing protein. | Competence protein ComFB. | 0.486 |
SFH48011.1 | aroE | SAMN05192551_101142 | SAMN05192551_101148 | Response regulator receiver domain-containing protein. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.550 |
SFH48011.1 | aroK | SAMN05192551_101142 | SAMN05192551_101147 | Response regulator receiver domain-containing protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.568 |
SFH48029.1 | SFH48011.1 | SAMN05192551_101143 | SAMN05192551_101142 | Chemotaxis protein CheC. | Response regulator receiver domain-containing protein. | 0.962 |
SFH48029.1 | SFH48047.1 | SAMN05192551_101143 | SAMN05192551_101144 | Chemotaxis protein CheC. | PAS domain S-box-containing protein. | 0.886 |
SFH48029.1 | SFH48068.1 | SAMN05192551_101143 | SAMN05192551_101145 | Chemotaxis protein CheC. | Leader peptidase (prepilin peptidase) / N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.781 |
SFH48029.1 | SFH48086.1 | SAMN05192551_101143 | SAMN05192551_101146 | Chemotaxis protein CheC. | Prepilin-type N-terminal cleavage/methylation domain-containing protein. | 0.682 |
SFH48029.1 | SFH48144.1 | SAMN05192551_101143 | SAMN05192551_101149 | Chemotaxis protein CheC. | Prepilin-type N-terminal cleavage/methylation domain-containing protein. | 0.523 |
SFH48029.1 | SFH48164.1 | SAMN05192551_101143 | SAMN05192551_101150 | Chemotaxis protein CheC. | Hypothetical protein. | 0.523 |
SFH48029.1 | SFH48184.1 | SAMN05192551_101143 | SAMN05192551_101151 | Chemotaxis protein CheC. | Hypothetical protein. | 0.523 |
SFH48029.1 | SFH48208.1 | SAMN05192551_101143 | SAMN05192551_101152 | Chemotaxis protein CheC. | Competence protein ComFB. | 0.486 |
SFH48029.1 | aroE | SAMN05192551_101143 | SAMN05192551_101148 | Chemotaxis protein CheC. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.550 |
SFH48029.1 | aroK | SAMN05192551_101143 | SAMN05192551_101147 | Chemotaxis protein CheC. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.569 |
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