Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFH51121.1 | SFH51140.1 | SAMN05192551_101299 | SAMN05192551_101300 | Serine/threonine protein kinase. | Protein phosphatase. | 0.998 |
SFH51121.1 | SFH51180.1 | SAMN05192551_101299 | SAMN05192551_101302 | Serine/threonine protein kinase. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.896 |
SFH51121.1 | SFH56053.1 | SAMN05192551_101299 | SAMN05192551_101521 | Serine/threonine protein kinase. | Serine/threonine protein kinase. | 0.484 |
SFH51121.1 | SFI01533.1 | SAMN05192551_101299 | SAMN05192551_105131 | Serine/threonine protein kinase. | Serine/threonine protein kinase. | 0.482 |
SFH51121.1 | SFI01577.1 | SAMN05192551_101299 | SAMN05192551_105133 | Serine/threonine protein kinase. | Serine/threonine protein kinase. | 0.484 |
SFH51121.1 | SFI15668.1 | SAMN05192551_101299 | SAMN05192551_10782 | Serine/threonine protein kinase. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.795 |
SFH51121.1 | SFI23116.1 | SAMN05192551_101299 | SAMN05192551_10950 | Serine/threonine protein kinase. | Serine/threonine protein kinase. | 0.484 |
SFH51121.1 | fmt | SAMN05192551_101299 | SAMN05192551_101305 | Serine/threonine protein kinase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.756 |
SFH51121.1 | rsgA | SAMN05192551_101299 | SAMN05192551_101298 | Serine/threonine protein kinase. | Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.955 |
SFH51140.1 | SFH51121.1 | SAMN05192551_101300 | SAMN05192551_101299 | Protein phosphatase. | Serine/threonine protein kinase. | 0.998 |
SFH51140.1 | SFH51180.1 | SAMN05192551_101300 | SAMN05192551_101302 | Protein phosphatase. | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | 0.960 |
SFH51140.1 | SFH56053.1 | SAMN05192551_101300 | SAMN05192551_101521 | Protein phosphatase. | Serine/threonine protein kinase. | 0.905 |
SFH51140.1 | SFH59149.1 | SAMN05192551_101300 | SAMN05192551_101682 | Protein phosphatase. | Pyruvate dehydrogenase E1 component beta subunit. | 0.871 |
SFH51140.1 | SFI01533.1 | SAMN05192551_101300 | SAMN05192551_105131 | Protein phosphatase. | Serine/threonine protein kinase. | 0.903 |
SFH51140.1 | SFI01577.1 | SAMN05192551_101300 | SAMN05192551_105133 | Protein phosphatase. | Serine/threonine protein kinase. | 0.906 |
SFH51140.1 | SFI15668.1 | SAMN05192551_101300 | SAMN05192551_10782 | Protein phosphatase. | Stage V sporulation protein D (sporulation-specific penicillin-binding protein). | 0.853 |
SFH51140.1 | SFI23116.1 | SAMN05192551_101300 | SAMN05192551_10950 | Protein phosphatase. | Serine/threonine protein kinase. | 0.907 |
SFH51140.1 | fmt | SAMN05192551_101300 | SAMN05192551_101305 | Protein phosphatase. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.857 |
SFH51140.1 | rsgA | SAMN05192551_101300 | SAMN05192551_101298 | Protein phosphatase. | Ribosome biogenesis GTPase; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.886 |
SFH51180.1 | SFH51121.1 | SAMN05192551_101302 | SAMN05192551_101299 | 16S rRNA (cytosine967-C5)-methyltransferase; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA. | Serine/threonine protein kinase. | 0.896 |
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